Schedule Wednesday

ABCD
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Room:San FranciscoMontrealSydney
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7:00 - 12:00Registration
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Session Chair: Alfonso Valencia
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8:45 - 9:00Announcements: ISCB - International Society for Computational Biology (B. Rost)
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9:00 - 9:50Keynote Lecture: Mihaela Zavolan. "Combining experimental and computational approaches to uncover miRNA-dependent gene regulation"
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10:00 - 11:00Regulation, Pathways, and Systems Biology III (Chair: Alfonso Valencia)Bioinformatics of Health and Disease, Biomarkers and Personalized Medicine II (Chair: Jaak Vilo)TechTrack
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(10:00) P40: J. Li. "The architecture of the gene regulatory networks for different tissues".(10:00) P43. Y. Yamanishi: "Drug target prediction using adverse event report systems: a pharmacogenomic approach".(10:00 - 10:25) T10: "Pathway Studio is a platform for integrating predicted and measured interactions, enabling pathway and network analysis of high-throughput molecular profiling data". Anton Yuryev, Sales Development Director, Pathway Studio, Elsevier.
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(10:20) P41: N. Radde. "Trajectory-oriented Bayesian experiment design versus Fisher A-optimal design: An in depth comparison study".(10:20) P44: T. Pham. "An accurate paired sample test for count data".(10:30 - 10:55) T11: "Finding unusual peptides on the Internet using plain three letter sequence codes". Hans-Juergen Himmler, AKos Consulting & Solutions Deutschland GmbH, Steinen, Germany.
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(10:40) P42 (H): C. Dieterich. "The mRNA-Bound Proteome and its Global Occupancy Profile on Protein-Coding Transcripts".(10:40) P45: P. Sykacek. "Bayesian Assignment of Gene Ontology Terms to Gene Expression Experiments".


 



 
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11:00 - 11:30Coffee & Posters
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11:30 - 12:30Protein Interactions, Molecular Networks, and Proteomics II (Anton Feenstra)Applied and Translational Bioinformatics (Chair: Ioannis Xenarios)TechTrack
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(11:30) P46: E. Glaab. "EnrichNet: network-based gene set enrichment analysis".(11:30) P49: F. Buettner. "A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst".(11:30) T12: "IBM Watson For Healthcare - the Technology" Bill Rapp, Chief Architect - Watson Solutions Development, Rochester, MN, USA.
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(11:50) P47: T. Goldberg. "LocTree2 predicts localization for all domains of life". (11:50) P50: H. Hatsuda. "Finding differentially expressed regions of arbitrary length in quantitative genomic data based on marked point process model".
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(12:10) P48: M. Kshirsagar. "Techniques to cope with missing data in host-pathogen protein interaction prediction".(12:10) P51: S. Ng. "PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis".
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12:30 - 14:00Lunch, Exhibition and Poster Viewing (Foyer)
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14:00 - 15:00Sequencing and Sequence Analysis III (Chair: Gaston Gonnet)Mutations, Variations, and Genomics (Sven Bergmann)
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(14:00) P52: Y. Liu. "Long read alignment based on maximal exact match seeds". (14:00) P55: L. Coin. "An exome sequencing pipeline for identifying and genotyping common CNVs associated with disease with application to psoriasis".
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(14:20) P53: A. Schliep. "Indel-tolerant Read Mapping with Trinucleotide Frequencies using Cache-Oblivious kd-Trees". (14:20) P56: L. Li. "Nonlinear dimension reduction with Wright-Fisher kernel for genotype aggregation and association mapping".
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(14:40) P54: T. Rausch. "DELLY: Structural variant discovery by integrated paired-end and split-read analysis". (14:40) P57 (H): M. Linial. "Viral-host coevolution: Playing 'seek and hide'".
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15:00 - 15:30Coffee
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15:30 - 15:40Presentation of ISMB/ECCB 2013 in Berlin (Anna Tramontano)
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15:40 - 16:00P58 (H): J. van Beek. "Modelling muscle energy transfer and whole body heat transport during a mountain time trial in the Tour the France". (Room: San Francisco)
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16:00 - 16:30Awards and closing remarks (Room: San Francisco)
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ca. 16:30End of Conference
Please note the schedule is subject to last minute changes.